nanoarchaeum

This data set contains the DNA sequence for the chromosome of the Nanoarchaeum 
equitans Kin4-M bacteria. The Accession number for this sequence is 
NC_005213.1.

datasets

Nanoarchaeum equitans Kin4-M Chromosome

A collection of statistical hypothesis tests and other
techniques for identifying certain spatial relationships/phenomena in
DNA sequences. In particular, it provides tests and graphical methods for determining
whether or not DNA sequences comply with Chargaff's second parity rule
or exhibit purine-pyrimidine parity. In addition, there are functions for
efficiently simulating discrete state space Markov chains and testing
arbitrary symbolic sequences of symbols for the presence of first-order
Markovianness.
Also, it has functions for counting words/k-mers (and cylinder patterns) in
arbitrary symbolic sequences. Functions which take a DNA sequence as input
can handle sequences stored as SeqFastadna objects from the 'seqinr' package.

Andrew Hart

spgs

Statistical Patterns in Genomic Sequences

Servet Martínez

Universidad de Chile 

INRIA-Chile 

Nanoarchaeum equitans Kin4-M Chromosome function

a <code>SeqFastadna</code> object.

Format

DNA sequence for the Nanoarchaeum equitans Kin4-M Chromosome — Nanoarchaeum equitans Kin4-M Chromosome

DNA sequence for the Nanoarchaeum equitans Kin4-M Chromosome

Nanoarchaeum equitans Kin4-M Chromosome: DNA sequence for the Nanoarchaeum equitans Kin4-M Chromosome

Description

Arguments

Format

See Also

Examples